Prediction of noncovalent interactions for PDB structure COMPLEX_9_PROTEIN
==========================================================================
Created on 2026/03/31 using PLIP v2.2.2

If you are using PLIP in your work, please cite:
Adasme,M. et al. PLIP 2021: expanding the scope of the protein-ligand interaction profiler to DNA and RNA. Nucl. Acids Res. (05 May 2021), gkab294. doi: 10.1093/nar/gkab294
Analysis was done on model 1.

UNK:d:0 (UNK) - SMALLMOLECULE
-----------------------------
Interacting chain(s): C,D,E,F


**Hydrophobic Interactions**
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+
| RESNR | RESTYPE | RESCHAIN | RESNR_LIG | RESTYPE_LIG | RESCHAIN_LIG | DIST | LIGCARBONIDX | PROTCARBONIDX | LIGCOO                | PROTCOO                | 
+=======+=========+==========+===========+=============+==============+======+==============+===============+=======================+========================+
| 29    | ILE     | C        | 0         | UNK         | d            | 3.88 | 24           | 5192          | 47.389, 28.849, 8.049 | 46.414, 25.602, 9.938  | 
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+
| 54    | ARG     | F        | 0         | UNK         | d            | 3.57 | 26           | 13472         | 45.474, 28.673, 6.585 | 48.535, 28.990, 4.767  | 
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+
| 54    | ARG     | F        | 0         | UNK         | d            | 3.48 | 24           | 13472         | 47.389, 28.849, 8.049 | 48.535, 28.990, 4.767  | 
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+
| 99    | LEU     | F        | 0         | UNK         | d            | 3.48 | 17           | 13949         | 46.477, 33.012, 8.560 | 46.165, 33.374, 12.006 | 
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+
| 101   | ALA     | D        | 0         | UNK         | d            | 3.74 | 26           | 9064          | 45.474, 28.673, 6.585 | 43.966, 25.250, 6.692  | 
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+


**Hydrogen Bonds**
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+-----------------------+
| RESNR | RESTYPE | RESCHAIN | RESNR_LIG | RESTYPE_LIG | RESCHAIN_LIG | SIDECHAIN | DIST_H-A | DIST_D-A | DON_ANGLE | PROTISDON | DONORIDX | DONORTYPE | ACCEPTORIDX | ACCEPTORTYPE | LIGCOO                | PROTCOO               | 
+=======+=========+==========+===========+=============+==============+===========+==========+==========+===========+===========+==========+===========+=============+==============+=======================+=======================+
| 54    | ARG     | F        | 0         | UNK         | d            | True      | 3.28     | 3.70     | 107.75    | True      | 13474    | Ng+       | 28          | O3           | 46.739, 26.731, 7.160 | 47.283, 27.360, 3.552 | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+-----------------------+
| 93    | SER     | D        | 0         | UNK         | d            | False     | 3.27     | 3.69     | 108.38    | False     | 32       | O3        | 8988        | O2           | 38.634, 34.017, 1.957 | 37.312, 31.786, 4.582 | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+-----------------------+
| 97    | GLU     | D        | 0         | UNK         | d            | True      | 2.03     | 2.84     | 138.43    | False     | 8        | O3        | 9031        | O2           | 40.710, 32.502, 0.841 | 41.373, 29.801, 1.392 | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+-----------------------+
| 307   | LYS     | E        | 0         | UNK         | d            | True      | 3.06     | 3.60     | 113.50    | True      | 12757    | N3+       | 34          | O3           | 40.081, 36.751, 5.620 | 42.718, 39.170, 6.049 | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+-----------------------+
| 311   | GLN     | C        | 0         | UNK         | d            | True      | 2.75     | 3.10     | 101.57    | True      | 7905     | Nam       | 8           | O3           | 40.710, 32.502, 0.841 | 38.307, 30.795, 1.803 | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+-----------------------+


**Salt Bridges**
+-------+---------+----------+---------------+-----------+-------------+--------------+------+-----------+-------------+--------------+-----------------------+-----------------------+
| RESNR | RESTYPE | RESCHAIN | PROT_IDX_LIST | RESNR_LIG | RESTYPE_LIG | RESCHAIN_LIG | DIST | PROTISPOS | LIG_GROUP   | LIG_IDX_LIST | LIGCOO                | PROTCOO               | 
+=======+=========+==========+===============+===========+=============+==============+======+===========+=============+==============+=======================+=======================+
| 307   | LYS     | E        | 12757         | 0         | UNK         | d            | 4.05 | True      | Carboxylate | 1,10         | 42.361, 35.796, 3.829 | 42.718, 39.170, 6.049 | 
+-------+---------+----------+---------------+-----------+-------------+--------------+------+-----------+-------------+--------------+-----------------------+-----------------------+


**pi-Stacking**
+-------+---------+----------+-----------+-------------+--------------+-------------------------------+----------+-------+--------+------+-------------------+-----------------------+-----------------------+
| RESNR | RESTYPE | RESCHAIN | RESNR_LIG | RESTYPE_LIG | RESCHAIN_LIG | PROT_IDX_LIST                 | CENTDIST | ANGLE | OFFSET | TYPE | LIG_IDX_LIST      | LIGCOO                | PROTCOO               | 
+=======+=========+==========+===========+=============+==============+===============================+==========+=======+========+======+===================+=======================+=======================+
| 94    | TYR     | D        | 0         | UNK         | d            | 8998,8999,9000,9001,9002,9003 | 5.33     | 76.90 | 0.97   | T    | 11,12,13,15,20,21 | 44.446, 35.501, 6.631 | 40.463, 33.651, 9.655 | 
+-------+---------+----------+-----------+-------------+--------------+-------------------------------+----------+-------+--------+------+-------------------+-----------------------+-----------------------+



